HPVomics

A therapeutic and epitome resource for Human Papillomaviruses

Predicted highly potential siRNAs (LR-HPVs)

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S.No.	HPV type	HPV target region	Start position	End position	Sense	Antisense	Inhibition (%)	Off-target (seed)
1	HPV44	E1^E4	14	32	cagtactgtgcaagacgta	tacgtcttgcacagtactg	57.8	34
2	HPV44	E1^E4	16	34	gtactgtgcaagacgtatc	gatacgtcttgcacagtac	56.74	5
3	HPV44	E1^E4	178	196	acaacgccagaaacaccgt	acggtgtttctggcgttgt	54.56	9
4	HPV44	E1^E4	15	33	agtactgtgcaagacgtat	atacgtcttgcacagtact	53.83	15
5	HPV44	E1^E4	13	31	acagtactgtgcaagacgt	acgtcttgcacagtactgt	53.78	38
6	HPV44	E1^E4	18	36	actgtgcaagacgtatcca	tggatacgtcttgcacagt	52.9	12
7	HPV44	E1^E4	17	35	tactgtgcaagacgtatcc	ggatacgtcttgcacagta	52.66	11
8	HPV44	E1^E4	171	189	aacaccaacaacgccagaa	ttctggcgttgttggtgtt	52.08	32
9	HPV44	E1^E4	170	188	aaacaccaacaacgccaga	tctggcgttgttggtgttt	50.72	34
10	HPV44	E1^E4	285	303	tattgtacagctacgcctg	caggcgtagctgtacaata	50.31	11
11	HPV70	E1^E4	163	181	cagacggagtgttcgtgga	tccacgaacactccgtctg	54	40
12	HPV70	E1^E4	12	30	tgaagtaccagtgacgaca	tgtcgtcactggtacttca	51.45	18
13	HPV70	E1^E4	162	180	acagacggagtgttcgtgg	ccacgaacactccgtctgt	50.73	30
14	HPV70	E1^E4	164	182	agacggagtgttcgtggac	gtccacgaacactccgtct	50.72	37
15	HPV72	E1^E4	47	65	tgttgaaactgttgggcga	tcgcccaacagtttcaaca	51.54	20
16	HPV11	E1^E4	10	28	gattcagcactgtacgaga	tctcgtacagtgctgaatc	60.24	9
17	HPV11	E1^E4	13	31	tcagcactgtacgagaagt	acttctcgtacagtgctga	54.98	43
18	HPV11	E1^E4	35	53	cattgctgaacctactaca	tgtagtaggttcagcaatg	54.71	48
19	HPV11	E1^E4	34	52	ccattgctgaacctactac	gtagtaggttcagcaatgg	54.42	48
20	HPV11	E1^E4	254	272	cagtgcagctacgcctata	tataggcgtagctgcactg	54.06	17
21	HPV11	E1^E4	41	59	tgaacctactacatacacc	ggtgtatgtagtaggttca	53.6	46
22	HPV11	E1^E4	169	187	tggccaacatcagatccgt	acggatctgatgttggcca	51.98	33
23	HPV11	E1^E4	253	271	acagtgcagctacgcctat	ataggcgtagctgcactgt	51.95	19
24	HPV11	E1^E4	255	273	agtgcagctacgcctatag	ctataggcgtagctgcact	51.82	38
25	HPV11	E1^E4	11	29	attcagcactgtacgagaa	ttctcgtacagtgctgaat	51.43	13
26	HPV11	E1^E4	42	60	gaacctactacatacaccc	gggtgtatgtagtaggttc	50.62	43
27	HPV11	E1^E4	18	36	actgtacgagaagtatcca	tggatacttctcgtacagt	50.18	47
28	HPV42	E1^E4	141	159	ggaacagcatacaacgtgc	gcacgttgtatgctgttcc	56.03	25
29	HPV42	E1^E4	95	113	gcacaccacaacgtccatt	aatggacgttgtggtgtgc	55.53	7
30	HPV42	E1^E4	92	110	attgcacaccacaacgtcc	ggacgttgtggtgtgcaat	54.68	21
31	HPV42	E1^E4	112	130	ttgacaaccaccacgcaga	tctgcgtggtggttgtcaa	54.21	26
32	HPV42	E1^E4	90	108	ccattgcacaccacaacgt	acgttgtggtgtgcaatgg	53.91	12
33	HPV42	E1^E4	136	154	cagacggaacagcatacaa	ttgtatgctgttccgtctg	53.35	42
34	HPV42	E1^E4	144	162	acagcatacaacgtgccca	tgggcacgttgtatgctgt	53.1	41
35	HPV42	E1^E4	91	109	cattgcacaccacaacgtc	gacgttgtggtgtgcaatg	52.52	15
36	HPV42	E1^E4	93	111	ttgcacaccacaacgtcca	tggacgttgtggtgtgcaa	52.47	25
37	HPV42	E1^E4	94	112	tgcacaccacaacgtccat	atggacgttgtggtgtgca	51.9	35
38	HPV42	E1^E4	329	347	ctgtggaagtcaggctacg	cgtagcctgacttccacag	51.83	45
39	HPV42	E1^E4	330	348	tgtggaagtcaggctacgc	gcgtagcctgacttccaca	51.57	21
40	HPV42	E1^E4	142	160	gaacagcatacaacgtgcc	ggcacgttgtatgctgttc	51.27	31
41	HPV42	E1^E4	197	215	gtgtggacagtcgccatca	tgatggcgactgtccacac	51.17	28
42	HPV42	E1^E4	21	39	acatccaccgacgcagaga	tctctgcgtcggtggatgt	50.99	40
43	HPV42	E1^E4	331	349	gtggaagtcaggctacgcc	ggcgtagcctgacttccac	50.86	8
44	HPV42	E1^E4	135	153	acagacggaacagcataca	tgtatgctgttccgtctgt	50.75	40
45	HPV42	E1^E4	161	179	catccaaacctcaccgcca	tggcggtgaggtttggatg	50.11	47
46	HPV42	E1^E4	222	240	actgcagacagaacacgca	tgcgtgttctgtctgcagt	50.42	19
47	HPV43	E1^E4	271	289	gaagtcacactacgcctat	ataggcgtagtgtgacttc	56.13	19
48	HPV43	E1^E4	270	288	ggaagtcacactacgccta	taggcgtagtgtgacttcc	55.68	11
49	HPV43	E1^E4	228	246	gtgcctaagcatacggacc	ggtccgtatgcttaggcac	55.32	7
50	HPV43	E1^E4	272	290	aagtcacactacgcctata	tataggcgtagtgtgactt	54.06	17
51	HPV43	E1^E4	230	248	gcctaagcatacggaccac	gtggtccgtatgcttaggc	52.34	25
52	HPV43	E1^E4	229	247	tgcctaagcatacggacca	tggtccgtatgcttaggca	52.28	13
53	HPV43	E1^E4	273	291	agtcacactacgcctataa	ttataggcgtagtgtgact	51.8	38
54	HPV43	E1^E4	27	45	gaagtatcctctgttgcgt	acgcaacagaggatacttc	50.86	14
55	HPV43	E1^E4	249	267	caccctagagggcacaacc	ggttgtgccctctagggtg	50.83	48
56	HPV43	E1^E4	268	286	gtggaagtcacactacgcc	ggcgtagtgtgacttccac	50.6	9
57	HPV43	E1^E4	269	287	tggaagtcacactacgcct	aggcgtagtgtgacttcca	50.58	22
58	HPV43	E1^E4	78	96	gtcccagattccacgtgca	tgcacgtggaatctgggac	50.31	34
59	HPV43	E1^E4	224	242	actcgtgcctaagcatacg	cgtatgcttaggcacgagt	50.12	40
60	HPV81	E1^E4	193	211	acactgcaccaccgaacat	atgttcggtggtgcagtgt	50.58	9
61	HPV81	E1^E4	254	272	cagcacagaaacacggaac	gttccgtgtttctgtgctg	50.36	24
62	HPV6	E1^E4	91	109	gcaccaaggaagacgcagt	actgcgtcttccttggtgc	55.63	36
63	HPV6	E1^E4	257	275	cagttcagctacgcctata	tataggcgtagctgaactg	53.16	17
64	HPV6	E1^E4	18	36	actacacaagaagtatcca	tggatacttcttgtgtagt	52.77	47
65	HPV6	E1^E4	256	274	acagttcagctacgcctat	ataggcgtagctgaactgt	51.88	19
66	HPV6	E1^E4	255	273	aacagttcagctacgccta	taggcgtagctgaactgtt	51.52	11
67	HPV6	E1^E4	231	249	cagcaccaaagacggaaca	tgttccgtctttggtgctg	51.3	13
68	HPV6	E1^E4	216	234	actaacaatcacgaccagc	gctggtcgtgattgttagt	50.87	11
69	HPV6	E1^E4	258	276	agttcagctacgcctatag	ctataggcgtagctgaact	50.69	38
70	HPV6	E1^E4	253	271	gtaacagttcagctacgcc	ggcgtagctgaactgttac	50.67	8
71	HPV6	E1^E4	229	247	accagcaccaaagacggaa	ttccgtctttggtgctggt	50.62	47
72	HPV6	E1^E4	254	272	taacagttcagctacgcct	aggcgtagctgaactgtta	50.5	22
73	HPV6	E1^E4	230	248	ccagcaccaaagacggaac	gttccgtctttggtgctgg	50.17	17
74	HPV6	E1^E4	130	148	gagcacgaggagtccaaca	tgttggactcctcgtgctc	50.13	40
75	HPV54	E1^E4	207	225	aggcacatcagtgacgata	tatcgtcactgatgtgcct	50.5	14
76	HPV61	E1^E4	233	251	tgaccagtggatcaacggt	accgttgatccactggtca	53.92	17
77	HPV61	E1^E4	5	23	ctgacagtgaagtacccag	ctgggtacttcactgtcag	51.39	45